| Issue Date | Title | Author(s) | Type | Access |
| 2017 | Development and implementation of bioinformatics tools for the reconstruction of GiSMos | Dias, António Carlos Fortuna Ribeiro | Master thesis | Open access |
| 6-Dec-2018 | Development of bioinformatics tools to accelerate the reconstruction of genome-scale models | Morais, José Amaro Ferreira | Master thesis | Open access |
| 2023 | Exploring Xylella fastidiosas metabolic traits using a GSM model of the phytopathogenic bacterium | Oliveira, Alexandre Rafael Machado; Cunha, Emanuel Rodrigues; Silva, Miguel, et al. | Conference paper | Restricted access (UMinho) |
| 2017 | Genome-Scale Metabolic Network Reconstruction of the dairy bacterium Streptococcus thermophilus | Cruz, Fernando João Pereira da | Master thesis | Open access |
| 4-Dec-2019 | Genome-scale reconstruction of the metabolic model of the probiotic bacterium Lactobacillus acidophilus | Cunha, Emanuel Rodrigues da | Master thesis | Open access |
| 2012 | Genome-wide metabolic (re-) annotation of Kluyveromyces lactis | Dias, Oscar; Gombert, Andreas Karoly; Ferreira, Eugénio C., et al. | Article | Open access |
| 31-Jul-2020 | Implementation of new tools and approaches for the reconstruction of genome-scale metabolic models | Ganâncio, Cláudia Isabela Sampaio | Master thesis | Open access |
| 4-Dec-2019 | Implementation of the object-relational mapping tool Hibernate in merlin’s framework | Pereira, Sofia Raquel Lages | Master thesis | Open access |
| 2019 | Modelling interspecies interactions of syntrophic communities of Syntrophobacter fumaroxidans and Methanospirillum hungatei | Bastos, José Jorge Sampaio | Master thesis | Embargoed access (2 Years) |
| 7-Jan-2018 | Reconstructing high-quality large-scale metabolic models with merlin | Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C., et al. | Book part | Restricted access (UMinho) |
| 5-Sep-2019 | SamPler - a novel method for selecting parameters for gene functional annotation routines | Cruz, Fernando João Pereira da; Lagoa, Davide Rafael Santos; Mendes, João, et al. | Article | Open access |
| 2022 | Towards a multivariate analysis of genome-scale metabolic models derived from the BiGG models database | Oliveira, Alexandre Rafael Machado; Cunha, Emanuel Rodrigues; Cruz, Fernando João Pereira da, et al. | Conference paper | Open access |
| 2005 | Un Merlin borroméen: topologie du genre et du temps dans Le Chevalier Silence, de Jacques Roubaud | Álvares, Cristina | Article | Open access |
