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Issue DateTitleAuthor(s)TypeAccess
2010AIBench: a rapid application development framework for translational research in biomedicineRocha, Miguel; Glez-Peña, Daniel; Reboiro-Jato, M., et al.ArticleOpen access
2012An integrated computational environment for elementary modes analysis of biochemical networksMaia, P.; Vilaça, P.; Rocha, I., et al.ArticleRestricted access (UMinho)
2013An integrated framework for strain optimizationMaia, Paulo; Rocha, I.; Rocha, MiguelConference paperOpen access
Apr-2019Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coliMaia, Paulo; Pérez-Rodríguez, Gael; Pérez-Pérez, Martín, et al.ArticleOpen access
18-Sep-2015Assessing the reliability of genome-scale metabolic models in the prediction of gene knockout phenotypesLopes, H.; Maia, Paulo; Patil, Kiran, et al.AbstractOpen access
2014CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental dataCarreira, Rafael; Evangelista, Pedro; Maia, Paulo, et al.ArticleOpen access
18-Sep-2015Comparing knockout strategies from in silico rational strain design toolsVieira, José Vítor Castro; Maia, Paulo; Rocha, Miguel, et al.AbstractOpen access
20-Jun-2019Comparison of pathway analysis and constraint-based methods for cell factory designVieira, Vítor; Maia, Paulo; Rocha, Miguel, et al.ArticleOpen access
30-Nov-2007Constraint-based approach for in silico Escherichia coli combined regulatory/metabolic modellingCarneiro, S.; Maia, Paulo; Rocha, Miguel, et al.AbstractOpen access
Mar-2017Development of a framework for metabolic pathway analysis-driven strain optimization methodsVieira, Vítor; Maia, Paulo; Rocha, Isabel, et al.ArticleOpen access
Jun-2016Development of an integrated framework for minimal cut set enumeration in constraint-based modelsVieira, Vítor; Maia, Paulo; Rocha, Isabel, et al.Conference paperRestricted access (UMinho)
18-Feb-2016Development of pathway analysis based algorithms for strain optimizationVieira, José Vítor Castro; Rocha, Miguel; Rocha, Isabel, et al.AbstractOpen access
2010Enhancing Elementary Flux Modes analysis using filtering techniques in an integrated environmentMaia, Paulo; Pont, Marcellinus; Tomb, Jean-François, et al.Conference paperOpen access
1-Jul-2008Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strainsMaia, Paulo; Rocha, I.; Ferreira, Eugénio C., et al.Conference paperOpen access
2007Evaluating simulated annealing algorithms in the optimization of bacterial strainsRocha, Miguel; Mendes, Rui; Maia, Paulo, et al.Conference paperOpen access
1-Sep-2008Evolutionary multiobjective algorithms for in silico metabolic engineeringRocha, I.; Maia, Paulo; Mendes, Rui, et al.AbstractOpen access
2008A framework for the development of biomedical text mining software toolsLourenço, Anália; Carreira, Rafael; Carneiro, S., et al.Conference paperOpen access
Mar-2012A generic multi-criterion approach for mutant strain optimizationMaia, Paulo; Rocha, I.; Rocha, MiguelAbstractOpen access
2017Identification of robust strain designs via tandem pFBA/LMOMA phenotype predictionMaia, Paulo; Rocha, Isabel Cristina Santos; Rocha, MiguelConference paperOpen access
2016iFloW: an integrated logistics software system for inbound supply chain traceabilitySantos, Nuno António Lira Fernandes Faria; Barbosa, Diogo Jorge Fernandes Serra; Maia, P., et al.Conference paperOpen access