Utilize este identificador para referenciar este registo:
https://hdl.handle.net/1822/73828
Título: | 4SpecID: reference DNA libraries auditing and annotation system for forensic applications |
Autor(es): | Neto, Luís Pinto, Nádia Proença, Alberto José Amorim, António Conde-Sousa, Eduardo |
Palavras-chave: | Barcoding DNA Species identification Forensics Database auditing Efficient software Taxonomy Genetics BOLD system |
Data: | 2-Jan-2021 |
Editora: | Multidisciplinary Digital Publishing Institute (MDPI) |
Revista: | Genes |
Citação: | Neto, L.; Pinto, N.; Proença, A.; Amorim, A.; Conde-Sousa, E. 4SpecID: Reference DNA Libraries Auditing and Annotation System for Forensic Applications. Genes 2021, 12, 61. https://doi.org/10.3390/genes12010061 |
Resumo(s): | Forensic genetics is a fast-growing field that frequently requires DNA-based taxonomy, namely, when evidence are parts of specimens, often highly processed in food, potions, or ointments. Reference DNA-sequences libraries, such as BOLD or GenBank, are imperative tools for taxonomic assignment, particularly when morphology is inadequate for classification. The auditing and curation of these datasets require reliable mechanisms, preferably with automated data preprocessing. Software tools were developed to grade these datasets considering as primary criterion the number of records, which is not compliant with forensic standards, where the priority is validation from independent sources. Moreover, 4SpecID is an efficient and freely available software tool developed to audit and annotate reference libraries, specifically designed for forensic applications. Its intuitive user-friendly interface virtually accesses any database and includes specific data mining functions tuned for the widespread BOLD repositories. The built tool was evaluated in laptop MacBook and a dual-Xeon server with a large BOLD dataset (<i>Culicidae,</i> 36,115 records), and the best execution time to grade the dataset on the laptop was 0.28 s. Datasets of <i>Bovidae</i> and <i>Felidae</i> families were used to evaluate the quality of the tool and the relevance of independent sources validation. |
Tipo: | Artigo |
URI: | https://hdl.handle.net/1822/73828 |
DOI: | 10.3390/genes12010061 |
e-ISSN: | 2073-4425 |
Versão da editora: | https://www.mdpi.com/2073-4425/12/1/61 |
Arbitragem científica: | yes |
Acesso: | Acesso aberto |
Aparece nas coleções: |
Ficheiros deste registo:
Ficheiro | Descrição | Tamanho | Formato | |
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genes-12-00061-v2.pdf | 3,09 MB | Adobe PDF | Ver/Abrir |
Este trabalho está licenciado sob uma Licença Creative Commons